Alternative splice form analysis

Post-analysis categorization
- Literature search
Post-survey categorization
- Features validated in most cases
- Features not validated
Simple lists
Preliminary lists

Tool name

H-DBAS - Human Transcriptome Database for Alternative Splicing

URL

http://jbirc.jbic.or.jp/h-dbas/

Important features

Citations

Takeda J, Suzuki Y, Sakate R, Sato Y, Gojobori T, Imanishi T, Sugano S. H-DBAS: human-transcriptome database for alternative splicing: update 2010. Nucleic AcIDs Res. 2010 Jan;38(Database issue):D86-90. Epub 2009 Dec 7. PubMed PMID: 19969536; PubMed Central PMCID: PMC2808982.

Year of publication

2010

Rank by usage frequency

100

Comments

1) Gene information gives chromosome number, position and strand. 2) Results can be downloaded. 3) Splice site details are shown graphically. 4) Also shows SNP in the graph. 5) Gene expression information is given, giving tissue specific expression in Affymetrix gene chip and Agilent. 6) Also gives information about Transcript feature.

Function

Types of alternative splice events, Display of splice events, Splice site details, Alignment, Predicted protein sequences, Expression information, Gene Information, ORF details, CDS details, Species, Finds alternative splicing in human, Finds alternative splicing in rat, Finds alternative splicing in mouse, Finds alternative splicing in dog, Finds alternative splicing in other species